Simona Cocco 

Directrice de Recherche CNRS
Professeur Attache PSL-IA
Membre de la commission 51 du CNRS
Laboratoire de Physique de l'ENS
UMR8023

Equipe: Physique Statistique et Inference pour la Biologie



mail :simona.cocco@phys.ens.fr 

phone: (33) 1 44323371 




  










Research Topics: Statistical Physics, Inference and Machine Learning for Biology 

De La Physique Statistique Pour Modéliser des Protéines









Book: From Statistical Physics to Data-Driven Modeling with Application to Quantitative Biology. Simona Cocco, Remi Monasson, Francesco Zamponi, Oxford University Press 2022
Tutorial Website

Post Doc Opening  



Publications 



Softwares

The softwares developed in the group are collected in the Cocco-Monasson github repository.

ACE: A fast and flexible code for solving the inverse Ising/Potts inference problem

JP Barton, E. De Leonardis, A. Coucke, S. Cocco
Bioinformatics doi: 10.1093/bioinformatics/btw328 (2016) 



ProteinMotifRBM:Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox and PGM

J. Tubiana, S. Cocco, R. Monasson
eLife 2019;8:e39397 (2019). See also the press release. 


RBM-MHC: a predictor for class I antigen presentation 

B. Bravi, J. Tubiana, S. Cocco, R. Monasson, T. Mora, A.M. Walczak
Cell Systems 12, 1-8 (2021) 

Teaching

M2 Course 2022 Machine Learning For Cognitive Sciences: Principles and Applications

M2 Course 2022 Computation and Data Driven Physics

M2 Course 2017-20212020 Inference,Information,Networks: from StatisticalPhysics to `Big’Biological Data 


People 

Archives 

Among my collaborators : R. Monasson, J.Marko, D. Chatenay , S. Leibler , M. Barbi , M. Peyrard , M. Weigt, J.Barton, P. Sulc, A. Komarova, C. Nizak, G.Debregeas, D. Hekstra, B. Greenbaum, N. Douarche, V. Baldazzi, C. Barbieri, V. Sessak, G. Tavoni, U. Ferrari, E. de Leonardis, A. Coucke, L. Posani, F.Rizzato,M. Molari, C Roussel, A Di Gioacchino, S. Wolf, J Fernandez de Cossio, E. Mauri,B.Bravi, C. Malbranke, M.Trippa



LPS-ENS, 24, rue Lhomond, Office GH301, 75231 Paris Cedex 05, France.