laboratoire de physique statistique
 
 
laboratoire de physique statistique

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2009 


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2009
Dynamics of colloidal crystals in shear flow - Derks, Didi and Wu, Yu Ling and van Blaaderen, Alfons and Imhof, Arnout
SOFT MATTER 51060-1065 (2009)

Abstract : We investigate particle dynamics in nearly hard sphere colloidal crystals submitted to a steady shear flow. Both the fluctuations of single colloids and the collective motion of crystalline layers as a whole are studied by using a home-built counter rotating shear cell in combination with confocal microscopy. Firstly, our real space observations confirm the global structure and orientation as well as the collective zigzag motion as found by early scattering experiments. Secondly, dynamic processes accompanying the shear melting transition are followed on the particle level. Local rearrangements in the crystal are seen to occur more frequently with increasing shear rate. This shear-enhanced particle mobility is quantified by measuring the random particle displacements from time-tracked particle coordinates. We find that shear induced melting takes place when these random displacements reach 12\% of the particle separation, reminiscent of the Lindemann criterion for melting in equilibrium systems. In addition, a dynamic criterion for melting, based on the relative importance of the long time self diffusion compared to the short time self diffusion, is discussed.
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Recognising random shapes with inverted contrast polarity - Patri, J-F and Ninio, J.
PERCEPTION 38178 (2009)
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Alternation frequency thresholds for stereopsis reveal different types of stereoscopic difficulties - Rychkova, S. I. and Ninio, J.
PERCEPTION 3859 (2009)
Suction in Darcy and Stokes interfacial flows: Maximum growth rate versus minimum dissipation - Ben Amar, M. and Boudaoud, A.
EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS 16683-88 (2009)

Abstract : Two-dimensional flows with suction or mass loss are investigated within Darcy's or Stokes' framework. Examples include a Hele-Shaw cell with a lifted plate or extraction of lipids from a lipid bilayer. An initially circular patch ret-racts due to the suction and might undergo an instability whereby it becomes undulating. The selection of the wavelength of undulations is investigated with the help of an extremum principle, the minimization of the generalized dissipation, from which derive the flow equations.
Energy distributions and effective temperatures in the packing of elastic sheets - Deboeuf, S. and Adda-Bedia, M. and Boudaoud, A.
EPL 85 (2009)

Abstract : The packing of elastic sheets is investigated in a quasi two-dimensional experimental setup: a sheet is pulled through a rigid hole acting as a container, so that its configuration is mostly prescribed by the cross-section of the sheet in the plane of the hole. The characterisation of the packed configuration is made possible by using refined image analysis. The geometrical properties and energies of the branches forming the cross-section are broadly distributed. We find distributions of energy with exponential tails. This setup naturally divides the system into two sub-systems: in contact with the container and within the bulk. While the geometrical properties of the sub-systems differ, their energy distributions are identical, indicating ``thermal'' homogeneity and allowing the definition of effective temperatures from the characteristic scales of the energy distributions. Copyright (C) EPLA, 2009
Electrical Coupling Mediates Tunable Low-Frequency Oscillations and Resonance in the Cerebellar Golgi Cell Network - Dugue, Guillaume P. and Brunel, Nicolas and Hakim, Vincent and Schwartz, Eric and Chat, Mireille and Levesque, Maxime and Courtemanche, Richard and Lena, Clement and Dieudonne, Stephane
NEURON 61126-139 (2009)

Abstract : Tonic motor control involves oscillatory synchronization of activity at low frequency (5-30 Hz) throughout the sensorimotor system, including cerebellar areas. We investigated the mechanisms underpinning cerebellar oscillations. We found that Golgi interneurons, which gate information transfer in the cerebellar cortex input layer, are extensively coupled through electrical synapses. When depolarized in vitro, these neurons displayed low-frequency oscillatory synchronization, imposing rhythmic inhibition onto granule cells. Combining experiments and modeling, we show that electrical transmission of the spike afterhyperpolarization is the essential component for oscillatory population synchronization. Rhythmic firing arises in spite of strong heterogeneities, is frequency tuned by the mean excitatory input to Golgi cells, and displays pronounced resonance when the modeled network is driven by oscillating inputs. In vivo, unitary Golgi cell activity was found to synchronize with low-frequency LFP oscillations occurring during quiet waking. These results suggest a major role for Golgi cells in coordinating cerebellar sensorimotor integration during oscillatory interactions.
Impurity Crystal in a Bose-Einstein Condensate - Roberts, David C. and Rica, Sergio
PHYSICAL REVIEW LETTERS 102 (2009)

Abstract : We investigate the behavior of impurity fields immersed in a larger condensate field in various dimensions. We discuss the localization of a single impurity field within a condensate and note the effects of surface energy. We derive the functional form of the attractive condensate-mediated interaction between two impurities. Generalizing the analysis to N impurity fields, we show that within various parameter regimes a crystal of impurity fields can form spontaneously in the condensate. Finally, the system of condensate and crystallized impurity structure is shown to have nonclassical rotational inertia, which is characteristic of superfluidity; i.e., the system can be seen to exhibit supersolid behavior.
Laws of crack motion and phase-field models of fracture - Hakim, Vincent and Karma, Alain
JOURNAL OF THE MECHANICS AND PHYSICS OF SOLIDS 57342-368 (2009)

Abstract : Recently proposed phase-field models offer self-consistent descriptions of brittle fracture. Here, we analyze these theories in the quasistatic regime of crack propagation. We show how to derive the laws of crack motion either by using solvability conditions in a perturbative treatment for slight departure from the Griffith threshold or by generalizing the Eshelby tensor to phase-field models. The analysis provides a simple physical interpretation of the second component of the classic Eshelby integral in the limit of vanishing crack propagation velocity: it gives the elastic torque on the crack tip that is needed to balance the Herring torque arising from the anisotropic surface energy. This force-balance condition can be interpreted physically based on energetic considerations in the traditional framework of continuum fracture mechanics, in support of its general validity for real systems beyond the scope of phase-field models. The obtained law of crack motion reduces in the quasistatic limit to the principle of local symmetry in isotropic media and to the principle of maximum energy-release-rate for smooth curvilinear cracks in anisotropic media. Analytical predictions of crack paths in anisotropic media are validated by numerical simulations. interestingly, for kinked cracks in anisotropic media, force-balance gives significantly different predictions from the principle of maximum energy-release-rate and the difference between the two criteria can be numerically tested. Simulations also show that predictions obtained from force-balance hold even if the phase-field dynamics is modified to make the failure process irreversible. Finally, the role of dissipative forces on the process zone scale as well as the extension of the results to motion of planar cracks under pure antiplane shear are discussed. (c) 2008 Elsevier Ltd. All rights reserved.
Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation - Manosas, M. and Mossa, A. and Forns, N. and Huguet, J. M. and Ritort, F.
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT  (2009)

Abstract : We investigate irreversibility and dissipation in single molecules that cooperatively fold/unfold in a two-state manner under the action of mechanical force. We apply path thermodynamics to derive analytical expressions for the average dissipated work and the average hopping number in two-state systems. It is shown how these quantities only depend on two parameters that characterize the folding/unfolding kinetics of the molecule: the fragility and the coexistence hopping rate. The latter has to be rescaled to take into account the appropriate experimental set-up. Finally we carry out pulling experiments with optical tweezers in a specifically designed DNA hairpin that shows two-state cooperative folding. We then use these experimental results to validate our theoretical predictions.
DOI
10
Capturing reconnection phenomena using generalized Eulerian-Lagrangian description in Navier-Stokes and resistive MHD - Cartes, Carlos and Bustamante, Miguel D. and Pouquet, Annick and Brachet, Marc E.
FLUID DYNAMICS RESEARCH 41 (2009)

Abstract : New generalized equations of motion for the Weber-Clebsch potentials that describe both the Navier-Stokes and magnetohydrodynamics (MHD) dynamics are derived. These depend on a new parameter, which has dimensions of time for Navier-Stokes and inverse velocity for MHD. Direct numerical simulations (DNSs) are performed. For Navier-Stokes, the generalized formalism captures the intense reconnection of vortices of the Boratav, Pelz and Zabusky (BPZ) flow, in agreement with the previous study by Ohkitani and Constantin. For MHD, the new formalism is used to detect magnetic reconnection in several flows: the three-dimensional (3D) Arnold, Beltrami and Childress (ABC) flow and the (2D and 3D) Orszag-Tang (OT) vortex. It is concluded that periods of intense activity in the magnetic enstrophy are correlated with periods of increasingly frequent resettings. Finally, the positive correlation between the sharpness of the increase in resetting frequency and the spatial localization of the reconnection region is discussed.
DOI
11
Force spectroscopy of a single artificial biomolecule bond: The Kramers' high-barrier limit holds close to the critical force - Husson, J. and Dogterom, M. and Pincet, F.
JOURNAL OF CHEMICAL PHYSICS 130 (2009)

Abstract : We use a minimal system with a single micron-size bead trapped with optical tweezers to investigate the kinetics of escape under force. Surprisingly, the exponential decay of the off rate with the barrier energy is still valid close to the critical force. Hence, the high viscosity approximation derived by Kramers in the case of a high energy barrier holds even for an energy barrier close to the thermal energy. Several recent models describe a single biomolecule bond by a smooth single-barrier energy profile. When this approach is accurate enough, our result justifies the use of Kramers' approximation in the high-force regime, close to the critical force of the system, as done in recent single biomolecule bond studies.
DOI
12
Helix-Coil Transition of DNA Monitored by Pressure Perturbation Calorimetry - Rayan, Gamal and Tsamaloukas, Alekos D. and Macgregor, Jr., Robert B. and Heerklotz, Heiko
JOURNAL OF PHYSICAL CHEMISTRY B 1131738-1742 (2009)

Abstract : We report the first use of pressure perturbation calorimetry (PPC) to characterize the heat-induced helix-coil transition of DNA polymers. The alternating copolymer poly[d(A-T)] was studied in aqueous solutions containing 5.2 and 18.2 mM Na(+); it exhibited helix-coil transition temperatures of 33.6 and 44.7 degrees C, respectively. The transition is accompanied by a negative molar volume change, Delta V = -2.6 and -2.1 mL/mol (base pair), respectively, and an increase in the coefficient of thermal expansion, Delta alpha = +5 x 10(-4) K(-1) (at both ionic strengths). These values are consistent with a greater hydration of the coil form. The larger water-accessible surface area of the coil causes more water molecules to assume a bound, more densely packed structure that then gradually decreases with increasing temperature, leading to a larger value of alpha. The magnitude of the volume changes detected by PPC were larger than those deduced from high-pressure UV spectroscopy, shedding light on the effect of pressure on Delta V. The shape of the PPC peak was nearly identical to the shape of the DSC peak, providing direct evidence for the correlation between the molar volume change and enthalpy change for the helix to coil transition of DNA.
DOI
13
Measurement of the Torque on a Single Stretched and Twisted DNA Using Magnetic Tweezers - Mosconi, Francesco and Allemand, Jean Francois and Bensimon, David and Croquette, Vincent
PHYSICAL REVIEW LETTERS 102 (2009)

Abstract : We deduced the torque applied on a single stretched and twisted DNA by integrating the change in the molecule's extension with respect to force as it is coiled. While consistent with previous direct measurements of the torque at high forces (F > 1 pN), this method, which is simple and does not require a sophisticated setup, allows for lower force estimates. We used this approach to deduce the effective torsional modulus of DNA, which decreases with force, and to estimate the buckling torque of DNA as a function of force in various salt conditions.
DOI
14
Recovery of Free Energy Branches in Single Molecule Experiments - Junier, Ivan and Mossa, Alessandro and Manosas, Maria and Ritort, Felix
PHYSICAL REVIEW LETTERS 102 (2009)

Abstract : We present a method for determining the free energy of coexisting states from irreversible work measurements. Our approach is based on a fluctuation relation that is valid for dissipative transformations in partially equilibrated systems. To illustrate the validity and usefulness of the approach, we use optical tweezers to determine the free energy branches of the native and unfolded states of a two-state molecule as a function of the pulling control parameter. We determine, within 0.6k(B)T accuracy, the transition point where the free energies of the native and the unfolded states are equal.
DOI
15
The von Karman Sodium experiment: Turbulent dynamical dynamos - Monchaux, Romain and Berhanu, Michael and Aumaitre, Sebastien and Chiffaudel, Arnaud and Daviaud, Francois and Dubrulle, Berengere and Ravelet, Florent and Fauve, Stephan and Mordant, Nicolas and Petrelis, Francois and Bourgoin, Mickael and Odier, Philippe and Pinton, Jean-Francois and Plihon, Nicolas and Volk, Romain
PHYSICS OF FLUIDS 21 (2009)

Abstract : The von Karman Sodium (VKS) experiment studies dynamo action in the flow generated inside a cylinder filled with liquid sodium by the rotation of coaxial impellers (the von Karman geometry). We first report observations related to the self-generation of a stationary dynamo when the flow forcing is R-pi-symmetric, i.e., when the impellers rotate in opposite directions at equal angular velocities. The bifurcation is found to be supercritical with a neutral mode whose geometry is predominantly axisymmetric. We then report the different dynamical dynamo regimes observed when the flow forcing is not symmetric, including magnetic field reversals. We finally show that these dynamics display characteristic features of low dimensional dynamical systems despite the high degree of turbulence in the flow.
DOI
16
Irreversibility and self-organization in hydrodynamic echo experiments - Duering, Gustavo and Bartolo, Denis and Kurchan, Jorge
PHYSICAL REVIEW E 79 (2009)

Abstract : We discuss the reversible-irreversible transition in low-Reynolds hydrodynamic systems driven by external cycling actuation. We introduce a set of models with no auto-organization, and show that a sharp crossover is obtained between a Lyapunov regime in which any noise source, such as thermal noise, is amplified exponentially, and a diffusive regime where this no longer holds. In the latter regime, groups of particles are seen to move cooperatively, yet no spatial organization occurs.
DOI
17
Thermal effects in the dynamics of disordered elastic systems - Bustingorry, S. and Kolton, A. B. and Rosso, A. and Krauth, W. and Giamarchi, T.
PHYSICA B-CONDENSED MATTER 404444-446 (2009)

Abstract : Many seemingly different macroscopic systems (magnets, ferroelectrics, CDW, vortices, etc.) can be described as generic disordered elastic systems. Understanding their static and dynamics thus poses challenging problems both from the point of view of fundamental physics and of practical applications. Despite important progress many questions remain open. In particular the temperature has drastic effects on the way these systems respond to an external force. We address here the important question of the thermal effect close to depinning, and whether these effects can be understood in the analogy with standard critical phenomena, analogy so useful to understand the zero temperature case. We show that close to the depinning force temperature leads to a rounding of the depinning transition and compute the corresponding exponent. In addition, using a novel algorithm it is possible to study precisely the behavior close to depinning, and to show that the commonly accepted analogy of the depinning with a critical phenomenon does not fully hold, since no divergent lengthscale exists in the steady state properties of the line below the depinning threshold. (c) 2008 Elsevier B.V. All rights reserved.
DOI
18
Morphogenesis of thin hyperelastic plates: A constitutive theory of biological growth in the Foppl-von Karman limit - Dervaux, Julien and Ciarletta, Pasquale and Ben Amar, Martine
JOURNAL OF THE MECHANICS AND PHYSICS OF SOLIDS 57458-471 (2009)

Abstract : The shape of plants and other living organisms is a crucial element of their biological functioning. Morphogenesis is the result of complex growth processes involving biological, chemical and physical factors at different temporal and spatial scales. This study aims at describing stresses and strains induced by the production and reorganization of the material. The mechanical properties of soft tissues are modeled within the framework of continuum mechanics in finite elasticity. The kinematical description is based on the multiplicative decomposition of the deformation gradient tensor into an elastic and a growth term. Using this formalism, the authors have studied the growth of thin hyperelastic samples. Under appropriate assumptions, the dimensionality of the problem can be reduced, and the behavior of the plate is described by a two-dimensional surface. The results of this theory demonstrate that the corresponding equilibrium equations are of the Foppl-von Karman type where growth acts as a source of mean and Gaussian curvatures. Finally, the cockling of paper and the rippling of a grass blade are considered as two examples of growth-induced pattern formation. (C) 2008 Published by Elsevier Ltd.
DOI
19
Crime and punishment: the economic burden of impunity - Gordon, M. B. and Iglesias, J. R. and Semeshenko, V. and Nadal, J. P.
EUROPEAN PHYSICAL JOURNAL B 68133-144 (2009)

Abstract : Crime is an economically relevant activity. It may represent a mechanism of wealth distribution but also a social and economic burden because of the interference with regular legal activities and the cost of the law enforcement system. Sometimes it may be less costly for the society to allow for some level of criminality. However, a drawback of such a policy is that it may lead to a high increase of criminal activity, that may become hard to reduce later on. Here we investigate the level of law enforcement required to keep crime within acceptable limits. A sharp phase transition is observed as a function of the probability of punishment. We also analyze other consequences of criminality as the growth of the economy, the inequality in the wealth distribution (the Gini coefficient) and other relevant quantities under different scenarios of criminal activity and probabilities of apprehension.
DOI
20
The Role of Fingerprints in the Coding of Tactile Information Probed with a Biomimetic Sensor - Scheibert, J. and Leurent, S. and Prevost, A. and Debregeas, G.
SCIENCE 3231503-1506 (2009)

Abstract : In humans, the tactile perception of fine textures (spatial scale <200 micrometers) is mediated by skin vibrations generated as the finger scans the surface. To establish the relationship between texture characteristics and subcutaneous vibrations, a biomimetic tactile sensor has been designed whose dimensions match those of the fingertip. When the sensor surface is patterned with parallel ridges mimicking the fingerprints, the spectrum of vibrations elicited by randomly textured substrates is dominated by one frequency set by the ratio of the scanning speed to the interridge distance. For human touch, this frequency falls within the optimal range of sensitivity of Pacinian afferents, which mediate the coding of fine textures. Thus, fingerprints may perform spectral selection and amplification of tactile information that facilitate its processing by specific mechanoreceptors.