General and useful references: see below.
9h30-10h15 Intro to computational neuroscience Presentation of the M1 Course C06 Presentation of the M2 Course-seminar 10h15-10h40 Presentation of the M2 Course CA6 10h40-11h: pause 11h-12h Short illustrative talks: 11h-11h20: "Matching law" 11h20-11h40: " Rescorla-Wagner learning rule" 11h40-12h: "Reinforcement learning" 12h-14h Students choose a paper and read it (and eat...) 14h-15h30: paper presentations and discussionPapers: see here.
Papers (access here):
Visual receptors and retinal interaction
H. K. Hartline - Nobel Lecture, December 12, 1967
(full text)
Enhancement of flicker by lateral inhibition
Ratliff F, Knight BW, Toyoda JI, Hartline HK, Science 1967;158:392-393
Inhibitory interaction in the retina of Limulus
Hartline, H. K., and Ratliff, F.,
in: Handbook of Sensory Physiology: Physiology of Photoreceptor Organs (M. G. F. Fuortes, Ed.), Berlin: Springer-Verlag, 1972, pp. 382-447
Papers:
Decision making : Machens 2005, Wang 2008 (here)
Pattern formation in visual cortex: Bressloff, Review 1999 (here; see in particular Chapter 4.6)
Class 9, Dec. 4: Anatomy; Putative organization principles of the connectivity.
Highly
Nonrandom Features of Synaptic Connectivity in Local Cortical Circuits
Sen Song, Per Jesper Sjöström, Markus Reig, Sacha Nelson, Dmitri B. Chklovskii
PLOS Biology, Volume 3, Issue 3, March 2005 (paper freely available online)
Pyramidal cell communication within local networks in
layer 2/3 of rat neocortex
Carl Holmgren, Tibor Harkany, BjöSvennenfors and Yuri Zilberter
J Physiol (2003), 551.1, pp. 139-153 (paper from J Physiol web site)
Cortical rewiring and information storage
D. B. Chklovskii, B. W. Mel & K. Svoboda
Nature 431, 782 - 788 (14 October 2004) (full text from Nature web site)
Connectivity optimization and the positioning of cortical areas
Vitaly A. Klyachko and Charles F. Stevens,
PNAS, June 24, 2003 Vol. 100, no. 13 pp. 7937-7941 (full text from PNAS web site)
Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems
Marcus Kaiser and Claus C. Hilgetag
PLOS Biology, Volume 2, Issue 7, July 2006 (paper freely available online)
Students: click here.
Class 10, Dec. 11: Guest lecture by Michael Berry (Princeton University)
Class 11, Dec. 18: Oscillations, synchronization and all that.
More course material will be available very soon
GENERAL REFERENCES
All
the following books are available at the RISC library.
Most of them are also available at the library of Institut Henri Poincaré.
*
Computational neuroscience books
Abbott
and Dayan, "Theoretical Neuroscience" (MIT Press, 2001)
A nice overview of the field of computational neuroscience, at a level comparable to that of the course.
Tuckwell,
"Introduction to Theoretical Neurobiology", Vols. I & II (Cambridge
U. Press, 1988)
A more mathematical treatment, with narrower scope and emphasis on single-neuron dynamics and statistics of neural activity.
Koch,
"Biophysics of Computation" (Oxford U. Press, 1999)
A
detailed presentation of computational aspects of single-neuron behavior,
closer to biology than Tuckwell's book (but more restricted in topics also).
Hertz,
Krogh, and Palmer, "Introduction to the Theory of Neural Computation" (Addison-Wesley,
1991 - now from: Perseus Book Group and Westview Press)
A
good reference book on memory models in the perspective of statistical
physics (and on many other neural network models). This book is more advanced
mathematically than the three other and a good resource for learning useful
statistical physics techniques.
Rieke,
Warland, de Ruyter van Steveninck, and Bialek, "Spikes" (MIT Press, 1997)
A
nice introduction to the statistical and information theoretic approach
to neural coding, with a title length inversely proportional to the number
of authors.
*
General neurobiology books:
Nicholls,
Martin, Wallace, and Fuchs, "From Neurons to Brain" (Sinauer Associates,
2001, 4th ed.)
A
readable and well-balanced introductory survey of neurobiology.
Kandel,
Schwartz, and Jessel, "Principles of Neural Science" (McGraw-Hill, 4th
edition, 2000)
Another
successful neurobiology survey text.
Hubel,
"Eye, Brain, and Vision" (Scientific American Library, 1988 and 1995)
A
delightful introduction to visual processing by the brain, at an undergraduate/interested
general reader level.
Johnston
and Wu, "Foundations of Cellular Neurophysiology" (MIT Press, 1995)
A
comprehensive introduction to the biophysics of neurons, with a quantitative
leaning.
Fain,
"Molecular and Cellular Physiology of Neurons" (Harvard University Press, 1999)
A nice very read on the physiology of single neurons and synapses, at an introductory level, with a lovely final part on
sensory transduction.
*
Periodicals:
A number of journals are devoted to computational neuroscience; these include Neural Computation, The Journal of Computational Neuroscience, Network: Computation in Neural Systems, Biological Cybernetics, Neural Networks. Other general or topical science journals also publish computational neuroscience articles; prominently, Nature, Nature Neuroscience, Science, Neuron, PNAS, PloS (free, online), The Journal of Physiology, The Journal of Neuroscience, The Journal of Neurophysiology, Cerebral Cortex, Vision Research, Trends in Neurosciences, Current Opinion in Neurobiology.